CDS
| Accession Number | TCMCG073C21682 |
| gbkey | CDS |
| Protein Id | XP_010546783.1 |
| Location | join(1884919..1884930,1885034..1885150,1885250..1885308,1885456..1885515,1885639..1885692,1885795..1885843,1885954..1886001,1886127..1886192,1886301..1886351,1886493..1886612,1886685..1886769,1886920..1887001,1887359..1887473,1887566..1887622,1887711..1887757,1887840..1887894,1888663..1888737) |
| Gene | LOC104818763 |
| GeneID | 104818763 |
| Organism | Tarenaya hassleriana |
Protein
| Length | 383aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA268022 |
| db_source | XM_010548481.2 |
| Definition | PREDICTED: flap endonuclease 1 isoform X2 [Tarenaya hassleriana] |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGGTATCAAGGGTTTAACGAAGCTTTTAGCGGACAATGCGCCAAAGGCCATGAAAGAGCTGAAATTCGAGAGCTATTTCGGTCGGAAAATCGCCATTGATGCTAGCATGAGCATTTACCAGTTCCTTATTGTTGTGGGAAGAACCGGAACTGAAATGCTTACGAATGAGGCCGGTGAAGTTACTAGCCACTTGCAAGGGATGTTTAATCGAACTATTCGCCTTCTCGAGGCTGGAATTAAGCCTGTCTATGTTTTTGACGGGCAACCTCCTGAGCTGAAAAAACAAGAACTAGCAAAACGTTACTCCAAGAGAGCTGATGCAACAGAAGACCTGAGCGCTGCAATTGAGGTGGGAAACAAGGAGGACATTGAGAAGTATAGTAAACGAACTGTGAAGGTGACAAAGCAGCACAATGAAGACTGTAAGAAACTTTTAAGGCTCATGGGGGTGCCGGTTGTCGAGGCCCCTTCTGAAGCAGAAGCACAATGTGCTGCACTTTGCAAAGCAGGAAAGGTGTATGCTGTGGCTTCTGAAGATATGGATTCCTTGACTTTTGGAGCTCCGAGGTTTCTTCGCCACCTGATGGATCCAAGCTCCAGAAAGATTCCTGTCATGGAATTTGAAACTGCTAAGATTTTAGAAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGCATTCTGTCAGGATGTGATTATTGTGACAGCATCCGAGGTATAGGAGGGCAGACTGCCTTGAAGCTGATCCGCCAACATGGATCTATTGAGAATATAGTGGAAAATATCAACAAAGACAGGTATCATATACCTGATGATTGGCCATATGTAGAAGCGCGGCAGCTATTCAAAGAACCTAATGTTCTAATTGAGGAAGATCAACTTGATATCAAGTGGACGTCTCCGGATGAAGAGGGTTTAGTTAACTTTCTAGTGAATGAAAATGGATTCAACATAGATAGAGTAACCAAGGCCGTAGAAAAAATTAAATCTGCAAAGAACAAGTCATCTCAGGGCAGGCTAGAGTCATTTTTCAAGCCAGTTGCCAACACATCCACGCCTGCTAAGAGAAAGGAAAACCCGGAGGGTAATGCTAAAAAAGCTTCAGATAAAAAGACAAAGGCAAGTGGCGGGAAGAAAAAGAAGTAA |
| Protein: MGIKGLTKLLADNAPKAMKELKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGQPPELKKQELAKRYSKRADATEDLSAAIEVGNKEDIEKYSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFETAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENIVENINKDRYHIPDDWPYVEARQLFKEPNVLIEEDQLDIKWTSPDEEGLVNFLVNENGFNIDRVTKAVEKIKSAKNKSSQGRLESFFKPVANTSTPAKRKENPEGNAKKASDKKTKASGGKKKK |